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HPtaa
Source Datasets |
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| Microarray Normal Datasets |
| Datasets |
GeneChip Type |
Samples |
Probes |
Status |
| UCLA |
U133AB |
61 |
44928 |
Finished |
| GENENOTE |
HG-U95A,B,C,D,E |
24 |
63194 |
Finished |
| GNF SymAtlas |
U133A, U95A,
GNF1b |
158 |
46761 |
Finished |
|
GeMDBJ |
U133AB |
16 |
44928 |
Finished |
|
GEOJP |
U133A |
36 |
19892 |
Finished | |
| Microarray Cancer Datasets |
| Dataset |
Carcinoma Name |
Microarray type |
Probes |
Paper |
Status |
| BRE1 |
Breast Cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| CAP1 |
Prostate Cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| LUG1 |
Lung Cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| COL1 |
Colon Cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| LYM1.1 |
Lymphoma_Follicular |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| LYM1.2 |
Lymphoma_Large_B-Cell |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| TCC1 |
Bladder Cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| UTE1 |
Uterus Cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| LEU1.1 |
Leukemia_ALL-B_ALL |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| LEU1.2 |
Leukemia_ALL-T_ALL |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| LEU1.3 |
Leukemia_AML |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| KID1 |
Renal Cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| PAN1 |
Panceatic cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| OVA1 |
Ovary cancer |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| CNS1.1 |
Glioblastoma |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| CNS1.2 |
Medulloblastoma |
Hu6800, Hu35KsubA |
16065 |
11742071 |
Finished |
| LUG2.1 |
Lung
Carcinoma(Adenocarcinoma) |
Affymetrix U95Av2 ch |
12600 |
11707567 |
Finished |
| LUG2.2 |
Lung Carcinoma(Carcinoid) |
Affymetrix U95Av2 ch |
12600 |
11707567 |
Finished |
| LUG2.3 |
Lung Carcinoma(Small Cell
Carcinoma) |
Affymetrix U95Av2 ch |
12600 |
11707567 |
Finished |
| LUG2.4 |
Lung Carcinoma(Squamous Cell
Carcinoma) |
Affymetrix U95Av2 ch |
12600 |
11707567 |
Finished |
| LUG3.1 |
Lung
Carcinoma(Adenocarcinoma) |
cDNA microarray |
24000 |
11707590 |
Finished |
| LUG3.2 |
Lung Carcinoma(Large Cell
Carcinoma) |
cDNA microarray |
24000 |
11707590 |
Finished |
| LUG3.3 |
Lung Carcinoma scc(Squamous
Cell Carcinoma ) |
cDNA microarray |
24000 |
11707590 |
Finished |
| LUG3.4 |
Lung Carcinoma sclc(Small
Cell Lung Cancer ) |
cDNA microarray |
24000 |
11707590 |
Finished |
| HEP1.1 |
Hepatocellular
Carcinoma(pritumor) |
cDNA microarray |
41027 |
12058060 |
Finished |
| HEP1.2 |
Hepatocellular
Carcinoma(metastatictumor) |
cDNA microarray |
41027 |
12058060 |
Finished |
| HEP1.3 |
Hepatocellular
Carcinoma(FNH) |
cDNA microarray |
41027 |
12058060 |
Finished |
| HEP1.4 |
Hepatocellular
Carcinoma(cellline) |
cDNA microarray |
41027 |
12058060 |
Finished |
| HEP1.5 |
Hepatocellular
Carcinoma(adenoma) |
cDNA microarray |
41027 |
12058060 |
Finished |
| HEP2 |
Hepatocellular Carcinoma |
cDNA microarray |
8767 |
12640447 |
Finished |
| PAN2.1 |
Pancreatic
Adenocarcinoma(44160) |
cDNA microarray |
44160 |
12651607 |
Finished |
| PAN2.2 |
Pancreatic
Adenocarcinoma(45312 tumor) |
cDNA microarray |
45312 |
12651607 |
Finished |
| PAN2.3 |
Pancreatic
Adenocarcinoma(45312 cellline) |
cDNA microarray |
45312 |
12651607 |
Finished |
| STO1.1 |
Stomach Carcinoma (Tumor) |
cDNA microarray |
44528 |
12925757 |
Finished |
| STO1.2 |
Stomach Carcinoma
(Celline) |
cDNA microarray |
44528 |
12925757 |
Finished |
| KID2 |
Clear Renal Cell
Carcinoma |
U133AB(2.1, 2.2) |
44928 |
14641932 |
Finished |
| CAP2 |
Prostate Adenocarcinoma |
cDNA microarray |
44182 |
14711987 |
Finished |
| BRE2.1 |
Breast Cancer yji
pritumor |
cDNA microarray |
43196 |
15034139 |
Finished |
| BRE2.2 |
Breast Cancer yji
cellline |
cDNA microarray |
43196 |
15034139 |
Finished |
| BRE3 |
Breast Cancer anitala |
cDNA microarray |
41090 |
15034139 |
Finished |
| BRE4 |
Breast Cancer hongjuan |
cDNA microarray |
42665 |
SMD |
Finished |
| BRE5 |
Breast Cancer |
U133AB |
44928 |
15161944 |
Finished |
| OVA2.1 |
Ovarian Cancer
MARCI(Tumor) |
cDNA microarray |
44164 |
12960427 |
Finished |
| OVA2.2 |
Ovarian Cancer
MARCI(Cellline) |
cDNA microarray |
44164 |
12960427 |
Finished |
| OVA3 |
Ovarian Cancer MATT |
cDNA microarray |
43196 |
12960427 |
Finished | |
| Cancer Type Prefix |
|
Prefix |
Cancer Type |
Prefix |
Cancer Type |
|
ALL |
All Cancer Tissues (EST or SAGE) |
LYM |
Lymphoma |
|
BON |
Bone or Cartilage Sarcoma |
MUS |
Rhabdomyosarcoma |
|
BRE |
Breast Cancer |
NEK |
Head and Neck Carcinoma |
|
CAP |
Prostate Cancer |
OVA |
Ovary Cancer |
|
CER |
Cervix Carcinoma |
PAN |
Pancreatic Cancer |
|
CNS |
CNS cancer |
PLA |
Choriocarcinoma |
|
COL |
Colon Cancer |
SKI |
melanoma |
|
EYE |
Eye Retinoblastoma |
STO |
Stomach Cancer |
|
HEP |
Hepatocellular Carcinoma |
TCC |
Transitional Cell Carcinoma |
|
KID |
Renal Carcinoma |
TES |
Testicular Cancer |
|
LEU |
Leukemia |
THY |
Thyroid Cancer |
|
LUG |
Lung Cancer |
UTE |
Uterus Carcinoma |
|
| Unigene EST Expression Data |
UniGene Build #184, Known
genes are from GenBank 04 May 2005, ESTs are from dbEST
through 04 May 2005
5,120,207 total sequences in
clusters
Build Method: Genome Based
Final Number
of Clusters (sets)
------------------------------------------------------------
53,256
sets total
26,411 sets contain at least one mRNA
13,319 sets contain at least one HTC sequence
50,815 sets contain at least one EST
24,127 sets
contain both mRNAs and ESTs
------------------------------------------------------------
Status: Finished
| |
| SAGE Expression Data |
Number of libraries:
316
Number of unique tags: 1291607
Total number of
tags: 18888779
UniGene clusters: 50379
Status:
Finished
|
|
EST AND SAGE Cancer
Types |
|
EST EXP |
Cancer Type |
SAGE EXP |
Cancer Type |
|
ALL.U |
All Cancer Tissues |
ALL.S |
All Cancer Tissues |
|
BON.U1 |
Bone Sarcoma |
BON.S1 |
Bone Sarcoma |
|
BON.U2 |
Cartilage Sarcoma |
BON.S2 |
Cartilage Sarcoma |
|
BRE.U |
Breast Cancer |
BRE.S |
Breast Cancer |
|
CAP.U |
Prostate Cancer |
CAP.S |
Prostate Cancer |
|
CER.U |
Cervix Carcinoma |
CER.S |
Cervix Carcinoma |
|
CNS.U1 |
CNS cancer |
CNS.S1 |
CNS cancer |
|
CNS.U2 |
Cerebellum, medulloblastoma |
CNS.S2 |
Cerebellum, medulloblastoma |
|
COL.U |
Colon Cancer |
COL.S |
Colon Cancer |
|
EYE.U |
Eye Retinoblastoma |
EYE.S |
Eye Retinoblastoma |
|
HEP.U |
Hepatocellular Carcinoma |
HEP.S |
Hepatocellular Carcinoma |
|
KID.U |
Renal Carcinoma |
KID.S |
Renal Carcinoma |
|
LUG.U |
Lung Cancer |
LUG.S |
Lung Cancer |
|
LYM.U1 |
Lymphoma-lymph node |
LYM.S1 |
Lymphoma-Lymph node |
|
LYM.U2 |
Lymphoma-lymphoreticular |
LYM.S2 |
Lymphoma-Lymph node |
|
MUS.U |
Rhabdomyosarcoma |
MUS.S |
Rhabdomyosarcoma |
|
NEK.U |
Head and Neck Carcinoma |
NEK.S |
Head and Neck Carcinoma |
|
OVA.U |
Ovary Cancer |
OVA.S |
Ovary Cancer |
|
PAN.U |
Pancreatic Cancer |
PAN.S |
Pancreatic Cancer |
|
PLA.U |
Choriocarcinoma |
PLA.S |
Choriocarcinoma |
|
SKI.U |
melanoma |
SKI.S |
melanoma |
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STO.U |
Stomach Cancer |
STO.S |
Stomach Cancer |
|
TCC.U |
Transitional Cell Carcinoma |
TCC.S |
Transitional Cell Carcinoma |
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TES.U |
Testicular Cancer |
TES.S |
Testicular Cancer |
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THY.U |
Thyroid Cancer |
THY.S |
Thyroid Cancer |
|
UTE.U |
Uterus Carcinoma |
UTE.S |
Uterus Carcinoma |
|
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HPtaa All rights Reserved ?Copyright
2005.
|
Source
Datasets 
